Added and cleaned up some comments

dev/tsunami_cchip.hh:
    clean up some comments
kern/linux/linux_syscalls.cc:
    Cleaned up spacing of syscall numbers
kern/linux/linux_system.hh:
    Added doxygen comments

--HG--
extra : convert_revision : 23ecdaa92a208458dd5c5d3c68ac9012ce2690da

3 files changed, 372 insertions, 331 deletions

diff --git a/dev/tsunami_cchip.hh b/dev/tsunami_cchip.hh
index 381fb58f1..79fadf06a 100644
--- a/dev/tsunami_cchip.hh
+++ b/dev/tsunami_cchip.hh
@@ -49,11 +49,11 @@ class TsunamiCChip : public FunctionalMemory
     static const Addr size = 0xfff;
 
   protected:
-      /**
-       * pointer to the tsunami object.
-       * This is our access to all the other tsunami
-       * devices.
-       */
+    /**
+     * pointer to the tsunami object.
+     * This is our access to all the other tsunami
+     * devices.
+     */
     Tsunami *tsunami;
 
     /**
diff --git a/kern/linux/linux_syscalls.cc b/kern/linux/linux_syscalls.cc
index 6e8d5d190..d67725050 100644
--- a/kern/linux/linux_syscalls.cc
+++ b/kern/linux/linux_syscalls.cc
@@ -33,332 +33,332 @@ namespace {
     standard_strings[SystemCalls<Linux>::Number] = {
 
 
-     "llseek",		 //0
-     "newselect",		 //1
-     "sysctl",		 //2
-     "access",		 //3
-     "acct",		 //4
-     "adjtimex",		 //5
-     "afs_syscall",		 //6
-     "alarm",		 //7
-     "bdflush",		 //8
-     "break",		 //9
-
-
-     "brk",		 //10
-     "capget",		 //11
-     "capset",		 //12
-     "chdir",		 //13
-     "chmod",		 //14
-     "chown",		 //15
-     "chown32",		 //16
-     "chroot",		 //17
-     "clock_getres",		 //18
-     "clock_gettime",		 //19
-
-
-     "clock_nanosleep",		 //20
-     "clock_settime",		 //21
-     "clone",		 //22
-     "close",		 //23
-     "creat",		 //24
-     "create_module",		 //25
-     "delete_module",		 //26
-     "dup",		 //27
-     "dup2",		 //28
-     "epoll_create",		 //29
-
-
-     "epoll_ctl",		 //30
-     "epoll_wait",		 //31
-     "execve",		 //32
-     "exit",		 //33
-     "exit_group",		 //34
-     "fadvise64",		 //35
-     "fadvise64_64",		 //36
-     "fchdir",		 //37
-     "fchmod",		 //38
-     "fchown",		 //39
-
-
-     "fchown32",		 //40
-     "fcntl",		 //41
-     "fcntl64",		 //42
-     "fdatasync",		 //43
-     "fgetxattr",		 //44
-     "flistxattr",		 //45
-     "flock",		 //46
-     "fork",		 //47
-     "fremovexattr",		 //48
-     "fsetxattr",		 //49
-
-
-     "fstat",		 //50
-     "fstat64",		 //51
-     "fstatfs",		 //52
-     "fstatfs64",		 //53
-     "fsync",		 //54
-     "ftime",		 //55
-     "ftruncate",		 //56
-     "ftruncate64",		 //57
-     "futex",		 //58
-     "get_kernel_syms",		 //59
-
-
-     "get_thread_area",		 //60
-     "getcwd",		 //61
-     "getdents",		 //62
-     "getdents64",		 //63
-     "getegid",		 //64
-     "getegid32",		 //65
-     "geteuid",		 //66
-     "geteuid32",		 //67
-     "getgid",		 //68
-     "getgid32",		 //69
-
-
-     "getgroups",		 //70
-     "getgroups32",		 //71
-     "getitimer",		 //72
-     "getpgid",		 //73
-     "getpgrp",		 //74
-     "getpid",		 //75
-     "getpmsg",		 //76
-     "getppid",		 //77
-     "getpriority",		 //78
-     "getresgid",		 //79
-
-
-     "getresgid32",		 //80
-     "getresuid",		 //81
-     "getresuid32",		 //82
-     "getrlimit",		 //83
-     "getrusage",		 //84
-     "getsid",		 //85
-     "gettid",		 //86
-     "gettimeofday",		 //87
-     "getuid",		 //88
-     "getuid32",		 //89
-
-
-     "getxattr",		 //90
-     "gtty",		 //91
-     "idle",		 //92
-     "init_module",		 //93
-     "io_cancel",		 //94
-     "io_destroy",		 //95
-     "io_getevents",		 //96
-     "io_setup",		 //97
-     "io_submit",		 //98
-     "ioctl",		 //99
-
-
-     "ioperm",		 //100
-     "iopl",		 //101
-     "ipc",		 //102
-     "kill",		 //103
-     "lchown",		 //104
-     "lchown32",		 //105
-     "lgetxattr",		 //106
-     "link",		 //107
-     "listxattr",		 //108
-     "llistxattr",		 //109
-
-
-     "lock",		 //110
-     "lookup_dcookie",		 //111
-     "lremovexattr",		 //112
-     "lseek",		 //113
-     "lsetxattr",		 //114
-     "lstat",		 //115
-     "lstat64",		 //116
-     "madvise",		 //117
-     "madvise1",		 //118
-     "mincore",		 //119
-
-
-     "mkdir",		 //120
-     "mknod",		 //121
-     "mlock",		 //122
-     "mlockall",		 //123
-     "mmap",		 //124
-     "mmap2",		 //125
-     "modify_ldt",		 //126
-     "mount",		 //127
-     "mprotect",		 //128
-     "mpx",		 //129
-
-
-     "mremap",		 //130
-     "msync",		 //131
-     "munlock",		 //132
-     "munlockall",		 //133
-     "munmap",		 //134
-     "nanosleep",		 //135
-     "nfsservctl",		 //136
-     "nice",		 //137
-     "oldfstat",		 //138
-     "oldlstat",		 //139
-
-
-     "oldolduname",		 //140
-     "oldstat",		 //141
-     "olduname",		 //142
-     "open",		 //143
-     "pause",		 //144
-     "personality",		 //145
-     "pipe",		 //146
-     "pivot_root",		 //147
-     "poll",		 //148
-     "prctl",		 //149
-
-
-     "pread64",		 //150
-     "prof",		 //151
-     "profil",		 //152
-     "ptrace",		 //153
-     "putpmsg",		 //154
-     "pwrite64",		 //155
-     "query_module",		 //156
-     "quotactl",		 //157
-     "read",		 //158
-     "readahead",		 //159
-
-
-     "readdir",		 //160
-     "readlink",		 //161
-     "readv",		 //162
-     "reboot",		 //163
-     "remap_file_pages",		 //164
-     "removexattr",		 //165
-     "rename",		 //166
-     "restart_syscall",		 //167
-     "rmdir",		 //168
-     "rt_sigaction",		 //169
-
-
-     "rt_sigpending",		 //170
-     "rt_sigprocmask",		 //171
-     "rt_sigqueueinfo",		 //172
-     "rt_sigreturn",		 //173
-     "rt_sigsuspend",		 //174
-     "rt_sigtimedwait",		 //175
-     "sched_get_priority_max",		 //176
-     "sched_get_priority_min",		 //177
-     "sched_getaffinity",		 //178
-     "sched_getparam",		 //179
-
-
-     "sched_getscheduler",		 //180
-     "sched_rr_get_interval",		 //181
-     "sched_setaffinity",		 //182
-     "sched_setparam",		 //183
-     "sched_setscheduler",		 //184
-     "sched_yield",		 //185
-     "select",		 //186
-     "sendfile",		 //187
-     "sendfile64",		 //188
-     "set_thread_area",		 //189
-
-
-     "set_tid_address",		 //190
-     "setdomainname",		 //191
-     "setfsgid",		 //192
-     "setfsgid32",		 //193
-     "setfsuid",		 //194
-     "setfsuid32",		 //195
-     "setgid",		 //196
-     "setgid32",		 //197
-     "setgroups",		 //198
-     "setgroups32",		 //199
-
-
-     "sethostname",		 //200
-     "setitimer",		 //201
-     "setpgid",		 //202
-     "setpriority",		 //203
-     "setregid",		 //204
-     "setregid32",		 //205
-     "setresgid",		 //206
-     "setresgid32",		 //207
-     "setresuid",		 //208
-     "setresuid32",		 //209
-
-
-     "setreuid",		 //210
-     "setreuid32",		 //211
-     "setrlimit",		 //212
-     "setsid",		 //213
-     "settimeofday",		 //214
-     "setuid",		 //215
-     "setuid32",		 //216
-     "setxattr",		 //217
-     "sgetmask",		 //218
-     "sigaction",		 //219
-
-
-     "sigaltstack",		 //220
-     "signal",		 //221
-     "sigpending",		 //222
-     "sigprocmask",		 //223
-     "sigreturn",		 //224
-     "sigsuspend",		 //225
-     "socketcall",		 //226
-     "ssetmask",		 //227
-     "stat",		 //228
-     "stat64",		 //229
-
-
-     "statfs",		 //230
-     "statfs64",		 //231
-     "stime",		 //232
-     "stty",		 //233
-     "swapoff",		 //234
-     "swapon",		 //235
-     "symlink",		 //236
-     "sync",		 //237
-     "sysfs",		 //238
-     "sysinfo",		 //239
-
-
-     "syslog",		 //240
-     "tgkill",		 //241
-     "time",		 //242
-     "timer_create",		 //243
-     "timer_delete",		 //244
-     "timer_getoverrun",		 //245
-     "timer_gettime",		 //246
-     "timer_settime",		 //247
-     "times",		 //248
-     "tkill",		 //249
-
-
-     "truncate",		 //250
-     "truncate64",		 //251
-     "ugetrlimit",		 //252
-     "ulimit",		 //253
-     "umask",		 //254
-     "umount",		 //255
-     "umount2",		 //256
-     "uname",		 //257
-     "unlink",		 //258
-     "uselib",		 //259
-
-
-     "ustat",		 //260
-     "utime",		 //261
-     "utimes",		 //262
-     "vfork",		 //263
-     "vhangup",		 //264
-     "vm86",		 //265
-     "vm86old",		 //266
-     "vserver",		 //267
-     "wait4",		 //268
-     "waitpid",		 //269
-
-
-     "write",		 //270
-     "writev",		 //271
+     "llseek",              //0
+     "newselect",           //1
+     "sysctl",              //2
+     "access",              //3
+     "acct",                //4
+     "adjtimex",            //5
+     "afs_syscall",         //6
+     "alarm",               //7
+     "bdflush",             //8
+     "break",               //9
+
+
+     "brk",                 //10
+     "capget",              //11
+     "capset",              //12
+     "chdir",               //13
+     "chmod",               //14
+     "chown",               //15
+     "chown32",             //16
+     "chroot",              //17
+     "clock_getres",        //18
+     "clock_gettime",       //19
+
+
+     "clock_nanosleep",     //20
+     "clock_settime",       //21
+     "clone",               //22
+     "close",               //23
+     "creat",               //24
+     "create_module",       //25
+     "delete_module",       //26
+     "dup",                 //27
+     "dup2",                //28
+     "epoll_create",        //29
+
+
+     "epoll_ctl",           //30
+     "epoll_wait",          //31
+     "execve",              //32
+     "exit",                //33
+     "exit_group",          //34
+     "fadvise64",           //35
+     "fadvise64_64",        //36
+     "fchdir",              //37
+     "fchmod",              //38
+     "fchown",              //39
+
+
+     "fchown32",            //40
+     "fcntl",               //41
+     "fcntl64",             //42
+     "fdatasync",           //43
+     "fgetxattr",           //44
+     "flistxattr",          //45
+     "flock",               //46
+     "fork",                //47
+     "fremovexattr",        //48
+     "fsetxattr",           //49
+
+
+     "fstat",               //50
+     "fstat64",             //51
+     "fstatfs",             //52
+     "fstatfs64",           //53
+     "fsync",               //54
+     "ftime",               //55
+     "ftruncate",           //56
+     "ftruncate64",         //57
+     "futex",               //58
+     "get_kernel_syms",     //59
+
+
+     "get_thread_area",     //60
+     "getcwd",              //61
+     "getdents",            //62
+     "getdents64",          //63
+     "getegid",             //64
+     "getegid32",           //65
+     "geteuid",             //66
+     "geteuid32",           //67
+     "getgid",              //68
+     "getgid32",            //69
+
+
+     "getgroups",           //70
+     "getgroups32",         //71
+     "getitimer",           //72
+     "getpgid",             //73
+     "getpgrp",             //74
+     "getpid",              //75
+     "getpmsg",             //76
+     "getppid",             //77
+     "getpriority",         //78
+     "getresgid",           //79
+
+
+     "getresgid32",         //80
+     "getresuid",           //81
+     "getresuid32",         //82
+     "getrlimit",           //83
+     "getrusage",           //84
+     "getsid",              //85
+     "gettid",              //86
+     "gettimeofday",        //87
+     "getuid",              //88
+     "getuid32",            //89
+
+
+     "getxattr",            //90
+     "gtty",                //91
+     "idle",                //92
+     "init_module",         //93
+     "io_cancel",           //94
+     "io_destroy",          //95
+     "io_getevents",        //96
+     "io_setup",            //97
+     "io_submit",           //98
+     "ioctl",               //99
+
+
+     "ioperm",              //100
+     "iopl",                //101
+     "ipc",                 //102
+     "kill",                //103
+     "lchown",              //104
+     "lchown32",            //105
+     "lgetxattr",           //106
+     "link",                //107
+     "listxattr",           //108
+     "llistxattr",          //109
+
+
+     "lock",                //110
+     "lookup_dcookie",      //111
+     "lremovexattr",        //112
+     "lseek",               //113
+     "lsetxattr",           //114
+     "lstat",               //115
+     "lstat64",             //116
+     "madvise",             //117
+     "madvise1",            //118
+     "mincore",             //119
+
+
+     "mkdir",               //120
+     "mknod",               //121
+     "mlock",               //122
+     "mlockall",            //123
+     "mmap",                //124
+     "mmap2",               //125
+     "modify_ldt",          //126
+     "mount",               //127
+     "mprotect",            //128
+     "mpx",                 //129
+
+
+     "mremap",              //130
+     "msync",               //131
+     "munlock",             //132
+     "munlockall",          //133
+     "munmap",              //134
+     "nanosleep",           //135
+     "nfsservctl",          //136
+     "nice",                //137
+     "oldfstat",            //138
+     "oldlstat",            //139
+
+
+     "oldolduname",         //140
+     "oldstat",             //141
+     "olduname",            //142
+     "open",                //143
+     "pause",               //144
+     "personality",         //145
+     "pipe",                //146
+     "pivot_root",          //147
+     "poll",                //148
+     "prctl",               //149
+
+
+     "pread64",             //150
+     "prof",                //151
+     "profil",              //152
+     "ptrace",              //153
+     "putpmsg",             //154
+     "pwrite64",            //155
+     "query_module",        //156
+     "quotactl",            //157
+     "read",                //158
+     "readahead",           //159
+
+
+     "readdir",             //160
+     "readlink",            //161
+     "readv",               //162
+     "reboot",              //163
+     "remap_file_pages",    //164
+     "removexattr",         //165
+     "rename",              //166
+     "restart_syscall",     //167
+     "rmdir",               //168
+     "rt_sigaction",        //169
+
+
+     "rt_sigpending",       //170
+     "rt_sigprocmask",      //171
+     "rt_sigqueueinfo",     //172
+     "rt_sigreturn",        //173
+     "rt_sigsuspend",       //174
+     "rt_sigtimedwait",     //175
+     "sched_get_priority_max",    //176
+     "sched_get_priority_min",    //177
+     "sched_getaffinity",   //178
+     "sched_getparam",      //179
+
+
+     "sched_getscheduler",  //180
+     "sched_rr_get_interval",     //181
+     "sched_setaffinity",   //182
+     "sched_setparam",      //183
+     "sched_setscheduler",  //184
+     "sched_yield",         //185
+     "select",              //186
+     "sendfile",            //187
+     "sendfile64",          //188
+     "set_thread_area",     //189
+
+
+     "set_tid_address",     //190
+     "setdomainname",       //191
+     "setfsgid",            //192
+     "setfsgid32",          //193
+     "setfsuid",            //194
+     "setfsuid32",          //195
+     "setgid",              //196
+     "setgid32",            //197
+     "setgroups",           //198
+     "setgroups32",         //199
+
+
+     "sethostname",         //200
+     "setitimer",           //201
+     "setpgid",             //202
+     "setpriority",         //203
+     "setregid",            //204
+     "setregid32",          //205
+     "setresgid",           //206
+     "setresgid32",         //207
+     "setresuid",           //208
+     "setresuid32",         //209
+
+
+     "setreuid",            //210
+     "setreuid32",          //211
+     "setrlimit",           //212
+     "setsid",              //213
+     "settimeofday",        //214
+     "setuid",              //215
+     "setuid32",            //216
+     "setxattr",            //217
+     "sgetmask",            //218
+     "sigaction",           //219
+
+
+     "sigaltstack",         //220
+     "signal",              //221
+     "sigpending",          //222
+     "sigprocmask",         //223
+     "sigreturn",           //224
+     "sigsuspend",          //225
+     "socketcall",          //226
+     "ssetmask",            //227
+     "stat",                //228
+     "stat64",              //229
+
+
+     "statfs",              //230
+     "statfs64",            //231
+     "stime",               //232
+     "stty",                //233
+     "swapoff",             //234
+     "swapon",              //235
+     "symlink",             //236
+     "sync",                //237
+     "sysfs",               //238
+     "sysinfo",             //239
+
+
+     "syslog",              //240
+     "tgkill",              //241
+     "time",                //242
+     "timer_create",        //243
+     "timer_delete",        //244
+     "timer_getoverrun",    //245
+     "timer_gettime",       //246
+     "timer_settime",       //247
+     "times",               //248
+     "tkill",               //249
+
+
+     "truncate",            //250
+     "truncate64",          //251
+     "ugetrlimit",          //252
+     "ulimit",              //253
+     "umask",               //254
+     "umount",              //255
+     "umount2",             //256
+     "uname",               //257
+     "unlink",              //258
+     "uselib",              //259
+
+
+     "ustat",               //260
+     "utime",               //261
+     "utimes",              //262
+     "vfork",               //263
+     "vhangup",             //264
+     "vm86",                //265
+     "vm86old",             //266
+     "vserver",             //267
+     "wait4",               //268
+     "waitpid",             //269
+
+
+     "write",               //270
+     "writev",              //271
     };
 
 
diff --git a/kern/linux/linux_system.hh b/kern/linux/linux_system.hh
index b9f301c60..83775cb92 100644
--- a/kern/linux/linux_system.hh
+++ b/kern/linux/linux_system.hh
@@ -61,21 +61,46 @@ class AlphaArguments;
 class LinuxSystem : public System
 {
   private:
+    /** Object pointer for the kernel code */
     ElfObject *kernel;
+
+    /** Object pointer for the console code */
     ElfObject *console;
 
+    /** kernel Symbol table */
     SymbolTable *kernelSymtab;
+
+    /** console symbol table */
     SymbolTable *consoleSymtab;
 
+    /** Event to halt the simulator if the kernel calls panic()  */
     BreakPCEvent *kernelPanicEvent;
+
+    /** Event to halt the simulator if the console calls panic() */
     BreakPCEvent *consolePanicEvent;
+
+    /** Event to skip determine_cpu_caches() because we don't support the
+     * IPRs that the code can access to figure out cache sizes
+     */
     SkipFuncEvent *skipCacheProbeEvent;
+
+    /** PC based event to skip the ide_delay_50ms() call */
     SkipFuncEvent *skipIdeDelay50msEvent;
+
+    /** Skip calculate_delay_loop() rather than waiting for this to be
+     * calculated
+     */
     LinuxSkipDelayLoopEvent *skipDelayLoopEvent;
 
+    /** Begining of kernel code */
     Addr kernelStart;
+
+    /** End of kernel code */
     Addr kernelEnd;
+
+    /** Entry point in the kernel to start at */
     Addr kernelEntry;
+
     bool bin;
     std::vector<string> binned_fns;
 
@@ -101,9 +126,25 @@ class LinuxSystem : public System
     int registerExecContext(ExecContext *xc);
     void replaceExecContext(ExecContext *xc, int xcIndex);
 
+    /**
+     * Returns the addess the kernel starts at.
+     * @return address the kernel starts at
+     */
     Addr getKernelStart() const { return kernelStart; }
+
+    /**
+     * Returns the addess the kernel ends at.
+     * @return address the kernel ends at
+     */
     Addr getKernelEnd() const { return kernelEnd; }
+
+    /**
+     * Returns the addess the entry point to the kernel code.
+     * @return entry point of the kernel code
+     */
     Addr getKernelEntry() const { return kernelEntry; }
+
+
     bool breakpoint();
 };