ext: Add pybind rev f4b81b3

Change-Id: I52e4fc9ebf2f59da57d8cf8f3e37cc79598c2f5f
Signed-off-by: Andreas Sandberg <andreas.sandberg@arm.com>
Reviewed-by: Andreas Hansson <andreas.hansson@arm.com>
Reviewed-by: Curtis Dunham <curtis.dunham@arm.com>
Reviewed-on: https://gem5-review.googlesource.com/2229
Reviewed-by: Tony Gutierrez <anthony.gutierrez@amd.com>
Reviewed-by: Jason Lowe-Power <jason@lowepower.com>
Reviewed-by: Pierre-Yves Péneau <pierre-yves.peneau@lirmm.fr>

1 files changed, 145 insertions, 0 deletions

diff --git a/ext/pybind11/tests/test_eigen.py b/ext/pybind11/tests/test_eigen.py
new file mode 100644
index 000000000..b0092fc8b
--- /dev/null
+++ b/ext/pybind11/tests/test_eigen.py
@@ -0,0 +1,145 @@
+import pytest
+
+with pytest.suppress(ImportError):
+    import numpy as np
+
+    ref = np.array([[ 0,  3,  0,  0,  0, 11],
+                    [22,  0,  0,  0, 17, 11],
+                    [ 7,  5,  0,  1,  0, 11],
+                    [ 0,  0,  0,  0,  0, 11],
+                    [ 0,  0, 14,  0,  8, 11]])
+
+
+def assert_equal_ref(mat):
+    np.testing.assert_array_equal(mat, ref)
+
+
+def assert_sparse_equal_ref(sparse_mat):
+    assert_equal_ref(sparse_mat.todense())
+
+
+@pytest.requires_eigen_and_numpy
+def test_fixed():
+    from pybind11_tests import fixed_r, fixed_c, fixed_passthrough_r, fixed_passthrough_c
+
+    assert_equal_ref(fixed_c())
+    assert_equal_ref(fixed_r())
+    assert_equal_ref(fixed_passthrough_r(fixed_r()))
+    assert_equal_ref(fixed_passthrough_c(fixed_c()))
+    assert_equal_ref(fixed_passthrough_r(fixed_c()))
+    assert_equal_ref(fixed_passthrough_c(fixed_r()))
+
+
+@pytest.requires_eigen_and_numpy
+def test_dense():
+    from pybind11_tests import dense_r, dense_c, dense_passthrough_r, dense_passthrough_c
+
+    assert_equal_ref(dense_r())
+    assert_equal_ref(dense_c())
+    assert_equal_ref(dense_passthrough_r(dense_r()))
+    assert_equal_ref(dense_passthrough_c(dense_c()))
+    assert_equal_ref(dense_passthrough_r(dense_c()))
+    assert_equal_ref(dense_passthrough_c(dense_r()))
+
+
+@pytest.requires_eigen_and_numpy
+def test_nonunit_stride_from_python():
+    from pybind11_tests import double_row, double_col, double_mat_cm, double_mat_rm
+
+    counting_mat = np.arange(9.0, dtype=np.float32).reshape((3, 3))
+    first_row = counting_mat[0, :]
+    first_col = counting_mat[:, 0]
+    assert np.array_equal(double_row(first_row), 2.0 * first_row)
+    assert np.array_equal(double_col(first_row), 2.0 * first_row)
+    assert np.array_equal(double_row(first_col), 2.0 * first_col)
+    assert np.array_equal(double_col(first_col), 2.0 * first_col)
+
+    counting_3d = np.arange(27.0, dtype=np.float32).reshape((3, 3, 3))
+    slices = [counting_3d[0, :, :], counting_3d[:, 0, :], counting_3d[:, :, 0]]
+    for slice_idx, ref_mat in enumerate(slices):
+        assert np.array_equal(double_mat_cm(ref_mat), 2.0 * ref_mat)
+        assert np.array_equal(double_mat_rm(ref_mat), 2.0 * ref_mat)
+
+
+@pytest.requires_eigen_and_numpy
+def test_nonunit_stride_to_python():
+    from pybind11_tests import diagonal, diagonal_1, diagonal_n, block
+
+    assert np.all(diagonal(ref) == ref.diagonal())
+    assert np.all(diagonal_1(ref) == ref.diagonal(1))
+    for i in range(-5, 7):
+        assert np.all(diagonal_n(ref, i) == ref.diagonal(i)), "diagonal_n({})".format(i)
+
+    assert np.all(block(ref, 2, 1, 3, 3) == ref[2:5, 1:4])
+    assert np.all(block(ref, 1, 4, 4, 2) == ref[1:, 4:])
+    assert np.all(block(ref, 1, 4, 3, 2) == ref[1:4, 4:])
+
+
+@pytest.requires_eigen_and_numpy
+def test_eigen_ref_to_python():
+    from pybind11_tests import cholesky1, cholesky2, cholesky3, cholesky4, cholesky5, cholesky6
+
+    chols = [cholesky1, cholesky2, cholesky3, cholesky4, cholesky5, cholesky6]
+    for i, chol in enumerate(chols, start=1):
+        mymat = chol(np.array([[1, 2, 4], [2, 13, 23], [4, 23, 77]]))
+        assert np.all(mymat == np.array([[1, 0, 0], [2, 3, 0], [4, 5, 6]])), "cholesky{}".format(i)
+
+
+@pytest.requires_eigen_and_numpy
+def test_special_matrix_objects():
+    from pybind11_tests import incr_diag, symmetric_upper, symmetric_lower
+
+    assert np.all(incr_diag(7) == np.diag([1, 2, 3, 4, 5, 6, 7]))
+
+    asymm = np.array([[ 1,  2,  3,  4],
+                      [ 5,  6,  7,  8],
+                      [ 9, 10, 11, 12],
+                      [13, 14, 15, 16]])
+    symm_lower = np.array(asymm)
+    symm_upper = np.array(asymm)
+    for i in range(4):
+        for j in range(i + 1, 4):
+            symm_lower[i, j] = symm_lower[j, i]
+            symm_upper[j, i] = symm_upper[i, j]
+
+    assert np.all(symmetric_lower(asymm) == symm_lower)
+    assert np.all(symmetric_upper(asymm) == symm_upper)
+
+
+@pytest.requires_eigen_and_numpy
+def test_dense_signature(doc):
+    from pybind11_tests import double_col, double_row, double_mat_rm
+
+    assert doc(double_col) == """
+        double_col(arg0: numpy.ndarray[float32[m, 1]]) -> numpy.ndarray[float32[m, 1]]
+    """
+    assert doc(double_row) == """
+        double_row(arg0: numpy.ndarray[float32[1, n]]) -> numpy.ndarray[float32[1, n]]
+    """
+    assert doc(double_mat_rm) == """
+        double_mat_rm(arg0: numpy.ndarray[float32[m, n]]) -> numpy.ndarray[float32[m, n]]
+    """
+
+
+@pytest.requires_eigen_and_scipy
+def test_sparse():
+    from pybind11_tests import sparse_r, sparse_c, sparse_passthrough_r, sparse_passthrough_c
+
+    assert_sparse_equal_ref(sparse_r())
+    assert_sparse_equal_ref(sparse_c())
+    assert_sparse_equal_ref(sparse_passthrough_r(sparse_r()))
+    assert_sparse_equal_ref(sparse_passthrough_c(sparse_c()))
+    assert_sparse_equal_ref(sparse_passthrough_r(sparse_c()))
+    assert_sparse_equal_ref(sparse_passthrough_c(sparse_r()))
+
+
+@pytest.requires_eigen_and_scipy
+def test_sparse_signature(doc):
+    from pybind11_tests import sparse_passthrough_r, sparse_passthrough_c
+
+    assert doc(sparse_passthrough_r) == """
+        sparse_passthrough_r(arg0: scipy.sparse.csr_matrix[float32]) -> scipy.sparse.csr_matrix[float32]
+    """  # noqa: E501 line too long
+    assert doc(sparse_passthrough_c) == """
+        sparse_passthrough_c(arg0: scipy.sparse.csc_matrix[float32]) -> scipy.sparse.csc_matrix[float32]
+    """  # noqa: E501 line too long